| 1 | # Wedge definition for R libraries
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| 2 | #
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| 3 | # Loaded by deps/wedge.sh.
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| 4 |
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| 5 | set -o nounset
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| 6 | set -o pipefail
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| 7 | set -o errexit
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| 8 |
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| 9 | # sourced
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| 10 | WEDGE_NAME='R-libs'
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| 11 | WEDGE_VERSION='2023-04-18'
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| 12 |
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| 13 | # We are installing into /home/wedge-makeer, and we want to use it from
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| 14 | # /home/andy or /home/uke
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| 15 | #
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| 16 | # WEDGE_IS_ABSOLUTE=1
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| 17 |
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| 18 | # R hits the network
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| 19 | WEDGE_LEAKY_BUILD=1
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| 20 |
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| 21 | # Notes: dplyr 1.0.3 as of January 2021 made these fail on Xenial.
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| 22 | # I did an R 4.0 installation. See build/py.sh install-new-R
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| 23 | #
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| 24 | # February 2023: compile errors with dplyr and Ubuntu 18.04, which has R 3.4.4.
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| 25 | # tidyverse has minimum R of 3.6.
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| 26 | # I need to install a new R again.
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| 27 |
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| 28 | wedge-make() {
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| 29 | echo 'No make step'
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| 30 |
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| 31 | }
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| 32 |
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| 33 | wedge-install() {
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| 34 | local build_dir=$1
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| 35 | local install_dir=$2
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| 36 |
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| 37 | # 2024-02 - weird fix, I had to add "rlang" on Debian Bookworm. Otherwise
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| 38 | # the smoke test for dplyr/tidyr would fail.
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| 39 |
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| 40 | # Also consider adding ggplot.
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| 41 | INSTALL_DEST=$install_dir Rscript -e \
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| 42 | 'install.packages(c("rlang", "dplyr", "tidyr", "stringr", "RUnit"), lib=Sys.getenv("INSTALL_DEST"), repos="https://cloud.r-project.org")'
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| 43 | }
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| 44 |
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| 45 | wedge-smoke-test() {
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| 46 | local install_dir=$1
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| 47 |
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| 48 | R_LIBS_USER=$install_dir Rscript -e \
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| 49 | 'library(rlang); library(dplyr); library(tidyr); library(stringr); library("RUnit"); print("OK")'
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| 50 | }
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